3RJL

Crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from Bacillus licheniformis (Target NYSGRC-000337)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.292 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.224 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of 1-Pyrroline-5-Carboxylate Dehydrogenase from Bacillus Licheniformis

Patskovsky, Y.Toro, R.Foti, R.Seidel, R.D.Almo, S.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
1-pyrroline-5-carboxylate dehydrogenase
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H
538Bacillus licheniformis DSM 13 = ATCC 14580Mutation(s): 0 
Gene Names: rocABLi00374BL01710
EC: 1.5.1.12 (PDB Primary Data), 1.2.1.88 (UniProt)
UniProt
Find proteins for Q65NN2 (Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46))
Explore Q65NN2 
Go to UniProtKB:  Q65NN2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ65NN2
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CD
Query on CD

Download Ideal Coordinates CCD File 
AA [auth C],
BA [auth C],
BB [auth G],
CA [auth C],
CB [auth G],
AA [auth C],
BA [auth C],
BB [auth G],
CA [auth C],
CB [auth G],
DA [auth C],
DB [auth G],
EA [auth C],
EB [auth G],
FA [auth C],
FB [auth G],
GA [auth C],
GB [auth G],
HA [auth C],
HB [auth H],
I [auth A],
IA [auth D],
IB [auth H],
J [auth A],
JA [auth D],
JB [auth H],
K [auth A],
KA [auth D],
L [auth A],
LA [auth D],
M [auth A],
MA [auth D],
N [auth A],
O [auth A],
OA [auth E],
P [auth A],
PA [auth E],
Q [auth A],
QA [auth E],
RA [auth E],
S [auth B],
SA [auth E],
T [auth B],
U [auth B],
V [auth B],
VA [auth F],
WA [auth F],
X [auth C],
XA [auth F],
Y [auth C],
YA [auth F],
Z [auth C]
CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download Ideal Coordinates CCD File 
AB [auth F],
KB [auth H],
NA [auth D],
R [auth A],
TA [auth E],
AB [auth F],
KB [auth H],
NA [auth D],
R [auth A],
TA [auth E],
UA [auth E],
W [auth B],
ZA [auth F]
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.292 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.224 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 103.267α = 90
b = 116.114β = 90.15
c = 181.768γ = 90
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-04-27
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance