Download MendeleyThe crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC in complex with ATP and glycine.
Tan, K., Zhang, R., Zhou, M., Kwon, K., Anderson, W.F., Joachimiak, A.To be published.
3RGL
The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC in complex with ATP and glycine
- PDB DOI: https://doi.org/10.2210/pdb3RGL/pdb
- Classification: LIGASE
- Organism(s): Campylobacter jejuni
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2011-04-08 Released: 2011-06-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.233
- R-Value Work: 0.173
- R-Value Observed: 0.176
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycyl-tRNA synthetase alpha subunit | A, B | 311 | Campylobacter jejuni | Mutation(s): 0 Gene Names: Cj0704, glyQ EC: 6.1.1.14 |  |
UniProt | |||||
Find proteins for Q9PPK3 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)) Explore Q9PPK3 Go to UniProtKB: Q9PPK3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9PPK3 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ATP Query on ATP | D [auth A], E [auth B] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N |  | Ligand Interaction | |
| LMR Query on LMR | F [auth B] | (2S)-2-hydroxybutanedioic acid C4 H6 O5 BJEPYKJPYRNKOW-REOHCLBHSA-N |  | Ligand Interaction | |
| GLY Query on GLY | C [auth A] | GLYCINE C2 H5 N O2 DHMQDGOQFOQNFH-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.45 Å
- R-Value Free: 0.233
- R-Value Work: 0.173
- R-Value Observed: 0.176
- Space Group: H 3
- Diffraction Data: https://doi.org/10.18430/M33RGL
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 112.74 | α = 90 |
| b = 112.74 | β = 90 |
| c = 157.753 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| MOLREP | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-06-08 Deposition Author(s): Tan, K., Zhang, R., Zhou, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2011-06-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
