3RE9 | pdb_00003re9

Crystal structure of sortaseC1 from Streptococcus suis

• PDB DOI: https://doi.org/10.2210/pdb3RE9/pdb

• Classification: TRANSFERASE
• Organism(s): Streptococcus suis 05ZYH33
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-04-04 Released: 2011-06-01 
• Deposition Author(s): Lu, G., Qi, J., Gao, F., Yan, J., Tang, J., Gao, G.F.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 
  0.261 (Depositor) 
• R-Value Work: 
  0.206 (Depositor) 
• R-Value Observed: 
  0.209 (Depositor) 

Literature

A novel "open-form" structure of sortaseC from Streptococcus suis.

Lu, G., Qi, J., Gao, F., Yan, J., Tang, J., Gao, G.F.

(2011) Proteins 79: 2764-2769

• PubMed: 21721048 
• DOI: https://doi.org/10.1002/prot.23093
• Primary Citation Related Structures: 
  3RE9

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Organizational Affiliation: 
• CAS Key Laboratory of Pathogenic Microbiology and Immunology (CASPMI), Institute of Microbiology, Chinese Academy of Sciences (CAS), Beijing 100101, China.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 21.17 kDa 
• Atom Count: 1,515 
• Modeled Residue Count: 179 
• Deposited Residue Count: 187 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sortase-like protein	A	187	Streptococcus suis 05ZYH33	Mutation(s): 0  Gene Names: SSU05_2098 EC: 2.3.2.12

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free:  0.261 (Depositor) 
• R-Value Work:  0.206 (Depositor) 
• R-Value Observed: 0.209 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.343	α = 90
b = 101.021	β = 90
c = 36.937	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SOLVE	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-06-01 
Deposition Author(s): Lu, G., Qi, J., Gao, F., Yan, J., Tang, J., Gao, G.F.

Revision History  

• Version 1.0: 2011-06-01
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2019-12-25
  Changes: Database references
• Version 1.3: 2024-03-20
  Changes: Data collection, Database references