3RD4 | pdb_00003rd4

Crystal structure of PROPEN_03304 from Proteus penneri ATCC 35198 Northeast Structural Genomics Consortium target id PvR55

• PDB DOI: https://doi.org/10.2210/pdb3RD4/pdb

• Classification: Structural Genomics, Unknown function
• Organism(s): Proteus penneri ATCC 35198
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-03-31 Released: 2011-05-25 
• Deposition Author(s): Seetharaman, J., Min, S., Kuzin, A., Wang, D., Ciccosanti, C., Sahdev, S., Nair, R., Rost, B., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 
  0.250 (Depositor), 0.257 (DCC) 
• R-Value Work: 
  0.211 (Depositor), 0.218 (DCC) 
• R-Value Observed: 
  0.211 (Depositor) 

Literature

Crystal structure of PROPEN_03304 from Proteus penneri ATCC 35198 Northeast Structural Genomics Consortium target id PvR55

Seetharaman, J., Min, S., Kuzin, A., Wang, D., Ciccosanti, C., Sahdev, S., Nair, R., Rost, B., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published.

Biological Assembly 1  

Global Symmetry: Helical - H  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 generated by PISA (software)

Biological Assembly 5  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 5 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 47.77 kDa 
• Atom Count: 2,616 
• Modeled Residue Count: 318 
• Deposited Residue Count: 400 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized protein	A, B, C, D	100	Proteus penneri ATCC 35198	Mutation(s): 0  Gene Names: PROPEN_03304

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free:  0.250 (Depositor), 0.257 (DCC) 
• R-Value Work:  0.211 (Depositor), 0.218 (DCC) 
• R-Value Observed: 0.211 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 138.415	α = 90
b = 91.365	β = 104.97
c = 52.198	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SOLVE	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-05-25 
Deposition Author(s): Seetharaman, J., Min, S., Kuzin, A., Wang, D., Ciccosanti, C., Sahdev, S., Nair, R., Rost, B., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2011-05-25
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-02-21
  Changes: Data collection, Database references