3RCY

CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing enzyme-like protein from Roseovarius sp. TM1035


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.181 
  • R-Value Work: 0.147 
  • R-Value Observed: 0.149 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 2.0 of the entry. See complete history


Literature

CRYSTAL STRUCTURE OF Mandelate racemase/muconate lactonizing enzyme-like protein from Roseovarius sp. TM1035

Malashkevich, V.N.Toro, R.Seidel, R.Garrett, S.Foti, R.Almo, S.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Mandelate racemase/muconate lactonizing enzyme-like proteinA, B, C, D, E, F, G, H433Roseovarius sp. TM1035Mutation(s): 0 
Gene Names: 149202287RTM1035_13208
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
RIB (Subject of Investigation/LOI)
Query on RIB

Download Ideal Coordinates CCD File 
CA [auth E], L [auth A], LA [auth G], M [auth A], NA [auth H], P [auth B], PA [auth H], Z [auth D]alpha-D-ribofuranose
C5 H10 O5
HMFHBZSHGGEWLO-AIHAYLRMSA-N
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
AA [auth E] , DA [auth E] , FA [auth F] , GA [auth G] , HA [auth G] , J [auth A] , JA [auth G] , K [auth A] , 
AA [auth E],  DA [auth E],  FA [auth F],  GA [auth G],  HA [auth G],  J [auth A],  JA [auth G],  K [auth A],  KA [auth G],  MA [auth H],  O [auth B],  Q [auth B],  R [auth B],  T [auth C],  U [auth C],  W [auth D],  X [auth D],  Y [auth D]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
BA [auth E], EA [auth F], I [auth A], IA [auth G], N [auth B], OA [auth H], S [auth C], V [auth D]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.181 
  • R-Value Work: 0.147 
  • R-Value Observed: 0.149 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 144.978α = 90
b = 162.143β = 90
c = 141.954γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
CBASSdata collection
HKL-3000data reduction

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-05-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Structure summary