3R89

Crystal structure of orotidine 5-phosphate decarboxylase from Anaerococcus prevotii DSM 20548


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.844 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.158 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of orotidine 5'-phosphate decarboxylase from Anaerococcus prevotii DSM 20548

Chang, C.Tesar, C.Bearden, J.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Orotidine 5'-phosphate decarboxylase
A, B
290Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1)Mutation(s): 0 
Gene Names: pyrF
EC: 4.1.1.23
Find proteins for C7RH50 (Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1))
Go to UniProtKB:  C7RH50
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.844 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.158 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 39.507α = 90.00
b = 108.848β = 90.00
c = 138.171γ = 90.00
Software Package:
Software NamePurpose
ARP/wARPmodel building
Cootmodel building
HKL-3000data reduction
DMphasing
REFMACrefinement
SHELXDEphasing
HKL-3000data scaling
PDB_EXTRACTdata extraction
RESOLVEphasing
MLPHAREphasing
HKL-3000phasing
SBC-Collectdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-04-06
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance