3R62 | pdb_00003r62

Structure of complement regulator Factor H mutant, T1184R.

PDB DOI: https://doi.org/10.2210/pdb3R62/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Komagataella pastoris
Mutation(s): Yes

Deposited: 2011-03-21 Released: 2011-06-29
Deposition Author(s): Morgan, H.P., Jiang, J., Herbert, A.P., Kavanagh, D., Uhran, D., Barlow, P.N., Hannan, J.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.52 Å
R-Value Free:
0.208 (Depositor), 0.206 (DCC)
R-Value Work:
0.178 (Depositor), 0.176 (DCC)
R-Value Observed:
0.179 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Crystallographic determination of the disease-associated T1184R variant of the complement Factor H.

Morgan, H.P., Jiang, J., Herbert, A.P., Kavanagh, D., Uhran, D., Barlow, P.N., Hannan, J.P.

(2011) Acta Crystallogr D Biol Crystallogr 67: 593-600

Macromolecule Content

Total Structure Weight: 29.75 kDa
Atom Count: 2,580
Modeled Residue Count: 252
Deposited Residue Count: 258
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Complement factor H	A, B	129	Homo sapiens	Mutation(s): 1 Gene Names: CFH, CFH complement factor H, HF, HF1, HF2
UniProt & NIH Common Fund Data Resources
Find proteins for P08603 (Homo sapiens) Explore P08603 Go to UniProtKB: P08603
PHAROS: P08603 GTEx: ENSG00000000971
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P08603
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.52 Å
R-Value Free: 0.208 (Depositor), 0.206 (DCC)
R-Value Work: 0.178 (Depositor), 0.176 (DCC)
R-Value Observed: 0.179 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.886	α = 90
b = 52.84	β = 90
c = 142.628	γ = 90

Software Package:

Software Name	Purpose
DNA	data collection
PHASES	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-06-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-06-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2018-01-24
Changes: Structure summary
Version 1.3: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.4: 2024-11-06
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.