3R2Q

Crystal Structure Analysis of yibF from E. Coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.153 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural and Functional Genomics of YibF, a Glutathione Transferase Homologue from Escherichia coli

Ladner, J.E.Stournan, N.V.Branch, M.C.Harp, J.Schaab, M.Brown, D.W.Armstrong, R.N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Uncharacterized GST-like protein yibF
A
202Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: yibF
Find proteins for P0ACA1 (Escherichia coli (strain K12))
Go to UniProtKB:  P0ACA1
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
GSH
Query on GSH

Download SDF File 
Download CCD File 
A
GLUTATHIONE
C10 H17 N3 O6 S
RWSXRVCMGQZWBV-WDSKDSINSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CSX
Query on CSX
A
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.153 
  • Space Group: P 43 3 2
Unit Cell:
Length (Å)Angle (°)
a = 111.340α = 90.00
b = 111.340β = 90.00
c = 111.340γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
SHELXrefinement
HKL-2000data reduction
SHELXL-97refinement
PDB_EXTRACTdata extraction
ARP/wARPmodel building
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-03-14
    Type: Initial release