3R15 | pdb_00003r15

Structure Treponema Denticola Factor H Binding Protein

PDB DOI: https://doi.org/10.2210/pdb3R15/pdb

Classification: PROTEIN BINDING
Organism(s): Treponema denticola
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-03-09 Released: 2012-03-14
Deposition Author(s): Miller, D.P., McDowell, J.V., Burgner, J., Heroux, A., Bell, J.K., Marconi, R.T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.236 (Depositor), 0.237 (DCC)
R-Value Work:
0.210 (Depositor)
R-Value Observed:
0.213 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 3R15

This is version 1.1 of the entry. See complete history.

Literature

Structure Treponema Denticola Factor H Binding Protein

Miller, D.P., McDowell, J.V., Burgner, J., Heroux, A., Bell, J.K., Marconi, R.T.

To be published.

Macromolecule Content

Total Structure Weight: 21.24 kDa
Atom Count: 1,345
Modeled Residue Count: 156
Deposited Residue Count: 186
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Factor H binding protein	A, B	93	Treponema denticola	Mutation(s): 0 Gene Names: fhbB, TDE_0108
UniProt
Find proteins for Q73RI0 (Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104)) Explore Q73RI0 Go to UniProtKB: Q73RI0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q73RI0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SCN Query on SCN Download:Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain C [auth B] MOL2 format, chain D [auth B] MOL2 format, chain C [auth B] mmCIF format, chain D [auth B] mmCIF format, chain C [auth B]	C [auth B], D [auth B]	THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M		Interactions Focus chain C [auth B] Focus chain D [auth B] Interactions & Density Focus chain C [auth B] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.236 (Depositor), 0.237 (DCC)
R-Value Work: 0.210 (Depositor)
R-Value Observed: 0.213 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.988	α = 90
b = 46.988	β = 90
c = 168.948	γ = 90

Software Package:

Software Name	Purpose
CBASS	data collection
PHASER	phasing
PHENIX	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2012-03-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-03-14
Type: Initial release
Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.