3R15 | pdb_00003r15

Structure Treponema Denticola Factor H Binding Protein

• PDB DOI: https://doi.org/10.2210/pdb3R15/pdb

• Classification: PROTEIN BINDING
• Organism(s): Treponema denticola
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-03-09 Released: 2012-03-14 
• Deposition Author(s): Miller, D.P., McDowell, J.V., Burgner, J., Heroux, A., Bell, J.K., Marconi, R.T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.236 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.210 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.213 (Depositor) 

Starting Model: experimental

Literature

Structure Treponema Denticola Factor H Binding Protein

Miller, D.P., McDowell, J.V., Burgner, J., Heroux, A., Bell, J.K., Marconi, R.T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 21.24 kDa 
• Atom Count: 1,345 
• Modeled Residue Count: 156 
• Deposited Residue Count: 186 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Factor H binding protein	A, B	93	Treponema denticola	Mutation(s): 0  Gene Names: fhbB, TDE_0108
UniProt
Find proteins for Q73RI0 (Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104)) Explore Q73RI0  Go to UniProtKB:  Q73RI0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SCN	C [auth B], D [auth B]	THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.236 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.210 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.213 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.988	α = 90
b = 46.988	β = 90
c = 168.948	γ = 90

Software Package:

Software Name	Purpose
CBASS	data collection
PHASER	phasing
PHENIX	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-03-14 
Deposition Author(s): Miller, D.P., McDowell, J.V., Burgner, J., Heroux, A., Bell, J.K., Marconi, R.T.

Revision History  

• Version 1.0: 2012-03-14
  Type: Initial release
  
• Version 1.1: 2023-09-13
  Changes: Data collection, Database references, Derived calculations, Refinement description