3R0P | pdb_00003r0p

Crystal structure of L-PSP putative endoribonuclease from uncultured organism

PDB DOI: https://doi.org/10.2210/pdb3R0P/pdb

Classification: HYDROLASE
Organism(s): uncultured organism
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-03-08 Released: 2011-03-23
Deposition Author(s): Cuff, M.E., Petit, P., Xu, X., Cui, H., Savchenko, A., Yakunin, A.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.212 (Depositor), 0.209 (DCC)
R-Value Work:
0.177 (Depositor), 0.175 (DCC)
R-Value Observed:
0.179 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of L-PSP putative endoribonuclease from uncultured organism

Cuff, M.E., Petit, P., Xu, X., Cui, H., Savchenko, A., Yakunin, A.F.

To be published.

Macromolecule Content

Total Structure Weight: 81.91 kDa
Atom Count: 6,046
Modeled Residue Count: 754
Deposited Residue Count: 762
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-PSP putative endoribonuclease	A, B, C, D, E A, B, C, D, E, F	127	uncultured organism	Mutation(s): 0
UniProt
Find proteins for D8VN48 (uncultured organism) Explore D8VN48 Go to UniProtKB: D8VN48
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D8VN48
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.212 (Depositor), 0.209 (DCC)
R-Value Work: 0.177 (Depositor), 0.175 (DCC)
R-Value Observed: 0.179 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.414	α = 90
b = 82.68	β = 90
c = 99.311	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SHELX	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SHELX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-03-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-03-23
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.