3QSV

Structural basis for DNA recognition by constitutive Smad4 MH1 dimers


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.212 
  • R-Value Observed: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for DNA recognition by constitutive Smad4 MH1 dimers

Baburajendran, N.Jauch, R.Zhen, C.T.Y.Kolatkar, P.R.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Mothers against decapentaplegic homolog 4ABCD132Mus musculusMutation(s): 0 
Gene Names: Smad4Dpc4Madh4
Find proteins for P97471 (Mus musculus)
Explore P97471 
Go to UniProtKB:  P97471
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(P*TP*GP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*CP*A)-3')E, F, G, H16N/A
    Small Molecules
    Ligands 1 Unique
    IDChainsName / Formula / InChI Key2D Diagram3D Interactions
    ZN
    Query on ZN

    Download CCD File 
    A, B, C, D
    ZINC ION
    Zn
    PTFCDOFLOPIGGS-UHFFFAOYSA-N
     Ligand Interaction
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 2.71 Å
    • R-Value Free: 0.272 
    • R-Value Work: 0.212 
    • R-Value Observed: 0.215 
    • Space Group: C 1 2 1
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 178.357α = 90
    b = 35.354β = 93.83
    c = 139.544γ = 90
    Software Package:
    Software NamePurpose
    HKL-2000data collection
    PHENIXmodel building
    PHENIXrefinement
    HKL-2000data reduction
    HKL-2000data scaling
    PHENIXphasing

    Structure Validation

    View Full Validation Report



    Entry History 

    Deposition Data

    Revision History 

    • Version 1.0: 2011-06-22
      Type: Initial release
    • Version 1.1: 2011-07-13
      Changes: Version format compliance