Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 41136.86 
• Atom Count: 2793 
• Residue Count: 351 
• Unique protein chains: 2

3QKK

Spirochromane Akt Inhibitors

• DOI: 10.2210/pdb3QKK/pdb

• Classification: TRANSFERASE/TRANSFERASE INHIBITOR
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): 1 


• Deposited: 2011-02-01 Released: 2011-03-30 
• Deposition Author(s): Kallan, N.C., Spencer, K.L., Blake, J.F., Xu, R., Heizer, J., Bencsik, J.R., Mitchell, I.S., Gloor, S.L., Martinson, M., Risom, T., Gross, S.D., Morales, T., Vigers, G.P.A., Brandhuber, B.J., Skelton, N.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.3 Å
• R-Value Free: 0.250 
• R-Value Work: 0.199 

Literature

Discovery and SAR of spirochromane Akt inhibitors.

Kallan, N.C., Spencer, K.L., Blake, J.F., Xu, R., Heizer, J., Bencsik, J.R., Mitchell, I.S., Gloor, S.L., Martinson, M., Risom, T., Gross, S.D., Morales, T.H., Wu, W.I., Vigers, G.P., Brandhuber, B.J., Skelton, N.J.

(2011) Bioorg.Med.Chem.Lett. 21: 2410-2414

• PubMed: 21392984 
• DOI: 10.1016/j.bmcl.2011.02.073
• Primary Citation of Related Structures:  
  3QKL


• PubMed Abstract: 
  

A novel series of spirochromane pan-Akt inhibitors is reported. SAR optimization furnished compounds with improved enzyme potencies and excellent selectivity over the related AGC kinase PKA. Attempted replacement of the phenol hinge binder provided compounds with excellent Akt enzyme and cell activities but greatly diminished selectivity over PKA.

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Organizational Affiliation: 

Array BioPharma, Inc., 3200 Walnut Street, Boulder, CO 80301, USA. [e-mail]

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
RAC-alpha serine/threonine-protein kinase	A	341	Homo sapiens	Mutation(s): 1  Gene Names: AKT1 (PKB, RAC) EC: 2.7.11.1
Find proteins for P31749 (Homo sapiens) Go to Gene View: AKT1 Go to UniProtKB:  P31749

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
GSK-3 beta peptide	C	10	Homo sapiens	Mutation(s): 0  Gene Names: GSK3B EC: 2.7.11.26
Find proteins for P49841 (Homo sapiens) Go to Gene View: GSK3B Go to UniProtKB:  P49841

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
SMH	A	N-(2-ethoxyethyl)-N-{(2S)-2-hydroxy-3-[(2R)-6-hydroxy-4-oxo-3,4-dihydro-1'H-spiro[chromene-2,3'-piperidin]-1'-yl]propyl}-2,6-dimethylbenzenesulfonamide C28 H38 N2 O7 S ONZIIEDMJXLRAD-NEKDWFFYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
TPO	A	L-PEPTIDE LINKING	C4 H10 N O6 P		THR

External Ligand Annotations
ID	Binding Affinity (Sequence Identity %)
SMH	IC50: 300 nM PDBBIND

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.3 Å
• R-Value Free: 0.250 
• R-Value Work: 0.199 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 47.590	α = 90.00
b = 56.814	β = 90.00
c = 151.349	γ = 90.00

Software Package:

Software Name	Purpose
CrystalClear	data collection
MOLREP	phasing
REFMAC	refinement
SCALA	data scaling
MOSFLM	data reduction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2011-02-01 
• Released Date: 2011-03-30 
• Deposition Author(s): Kallan, N.C., Spencer, K.L., Blake, J.F., Xu, R., Heizer, J., Bencsik, J.R., Mitchell, I.S., Gloor, S.L., Martinson, M., Risom, T., Gross, S.D., Morales, T., Vigers, G.P.A., Brandhuber, B.J., Skelton, N.J.

Revision History 

• Version 1.0: 2011-03-30
  Type: Initial release
• Version 1.1: 2011-07-13
  Type: Version format compliance