3QJG

Epidermin biosynthesis protein EpiD from Staphylococcus aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.211 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Epidermin biosynthesis protein EpiD from Staphylococcus aureus.

Osipiuk, J.Makowska-Grzyska, M.Kwon, K.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Epidermin biosynthesis protein EpiD
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
175Staphylococcus aureus subsp. aureus COLMutation(s): 0 
Gene Names: epiDSACOL1875
UniProt
Find proteins for A0A0H2WWM9 (Staphylococcus aureus (strain COL))
Explore A0A0H2WWM9 
Go to UniProtKB:  A0A0H2WWM9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H2WWM9
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
FMN
Query on FMN

Download Ideal Coordinates CCD File 
CA [auth K]
DA [auth L]
M [auth A]
P [auth B]
Q [auth C]
CA [auth K],
DA [auth L],
M [auth A],
P [auth B],
Q [auth C],
R [auth D],
U [auth E],
V [auth F],
W [auth G],
X [auth H],
Y [auth I],
Z [auth J]
FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
AA [auth J]
BA [auth J]
N [auth A]
O [auth A]
S [auth D]
AA [auth J],
BA [auth J],
N [auth A],
O [auth A],
S [auth D],
T [auth D]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 160.991α = 90
b = 111.256β = 97.25
c = 154.569γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing
HKL-3000phasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2011-02-09
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-11-08
    Changes: Refinement description
  • Version 1.3: 2023-09-13
    Changes: Data collection, Database references, Derived calculations, Refinement description