3Q8W

A b-aminoacyl containing thiazolidine derivative and DPPIV complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.64 Å
  • R-Value Free: 0.324 
  • R-Value Work: 0.282 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery of b-aminoacyl containing thiazolidine derivatives as potent and selective dipeptidyl peptidase IV inhibitors

Park, W.S.Kang, S.K.Jun, M.A.Shin, M.S.Kim, K.Y.Rhee, S.D.Bae, M.A.Kim, M.S.Kim, K.R.Kang, N.S.Yoo, S.E.Lee, J.O.Song, D.H.Silinski, P.Schneider, S.E.Ahn, J.H.Kim, S.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dipeptidyl peptidase 4
A, B
732Homo sapiensMutation(s): 0 
Gene Names: DPP4 (ADCP2, CD26)
EC: 3.4.14.5
Find proteins for P27487 (Homo sapiens)
Go to Gene View: DPP4
Go to UniProtKB:  P27487
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AZV
Query on AZV

Download SDF File 
Download CCD File 
A, B
N-(4-{[({(2R)-3-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl]-1,3-thiazolidin-2-yl}carbonyl)amino]methyl}phenyl)-D-valine
C26 H31 F3 N4 O4 S
ZUNWVBNRQTWJFD-WQWSHVPRSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
AZVIC50: 10 nM (100) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.64 Å
  • R-Value Free: 0.324 
  • R-Value Work: 0.282 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 118.412α = 90.00
b = 124.501β = 90.00
c = 133.119γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
CNSrefinement
SCALEPACKdata scaling
HKL-2000data collection
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2011-01-07 
  • Released Date: 2011-03-16 
  • Deposition Author(s): Lee, J.O., Song, D.H.

Revision History 

  • Version 1.0: 2011-03-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance