3Q84 | pdb_00003q84

Crystal structure of human PACSIN 1 F-BAR domain

• PDB DOI: https://doi.org/10.2210/pdb3Q84/pdb

• Classification: ENDOCYTOSIS
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2011-01-06 Released: 2012-02-22 
• Deposition Author(s): Bai, X.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free: 
  0.294 (Depositor), 0.291 (DCC) 
• R-Value Work: 
  0.221 (Depositor), 0.234 (DCC) 
• R-Value Observed: 
  0.225 (Depositor) 

Literature

Crystal structure of human PACSIN 1 F-BAR domain

Bai, X.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 3 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 213.07 kDa 
• Atom Count: 14,091 
• Modeled Residue Count: 1,688 
• Deposited Residue Count: 1,770 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein kinase C and casein kinase substrate in neurons protein 1	A, B, C [auth G], D [auth H], E [auth M], F [auth N]	295	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BY11 (Homo sapiens) Explore Q9BY11  Go to UniProtKB:  Q9BY11
PHAROS:  Q9BY11 GTEx:  ENSG00000124507

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CA	G [auth B], H [auth G], I [auth M], J [auth N]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B, C [auth G], D [auth H], E [auth M], F [auth N]	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free:  0.294 (Depositor), 0.291 (DCC) 
• R-Value Work:  0.221 (Depositor), 0.234 (DCC) 
• R-Value Observed: 0.225 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.346	α = 90
b = 154.29	β = 90.34
c = 215.446	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
MLPHARE	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-02-22 
Deposition Author(s): Bai, X.

Revision History  

• Version 1.0: 2012-02-22
  Type: Initial release
  
• Version 1.1: 2024-11-13
  Changes: Data collection, Database references, Derived calculations, Structure summary