3Q5W | pdb_00003q5w

Structure of proteasome tether

PDB DOI: https://doi.org/10.2210/pdb3Q5W/pdb

Classification: CELL CYCLE
Organism(s): Schizosaccharomyces pombe
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-12-30 Released: 2011-10-19
Deposition Author(s): Schumacher, M.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free:
0.276 (Depositor), 0.279 (DCC)
R-Value Work:
0.231 (Depositor), 0.235 (DCC)
R-Value Observed:
0.231 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of Proteasome Tether

Schumacher, M.A., Glover, T., Weijun, X.

To be published.

Macromolecule Content

Total Structure Weight: 57.49 kDa
Atom Count: 3,239
Modeled Residue Count: 397
Deposited Residue Count: 490
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein cut8	A, B	245	Schizosaccharomyces pombe	Mutation(s): 0 Gene Names: cut8, SPAC17C9.13c
UniProt
Find proteins for P38937 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore P38937 Go to UniProtKB: P38937
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P38937
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free: 0.276 (Depositor), 0.279 (DCC)
R-Value Work: 0.231 (Depositor), 0.235 (DCC)
R-Value Observed: 0.231 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 35.66	α = 103.92
b = 51.18	β = 100.02
c = 71.33	γ = 98

Software Package:

Software Name	Purpose
ADSC	data collection
SOLVE	phasing
CNS	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-10-19

Deposition Author(s):

Schumacher, M.A.

Revision History (Full details and data files)

Version 1.0: 2011-10-19
Type: Initial release
Version 1.1: 2024-10-09
Changes: Data collection, Database references, Derived calculations, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.