3Q5J

Crystal structure of the amino-terminal domain of HSP90 from Leishmania major, LMJF33.0312:M1-K213 in the presence of 17-DMAP-geldanamycin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of the amino-terminal domain of HSP90 from Leishmania major, LMJF33.0312:M1-K213 in the presence of 17-DMAP-geldanamycin.

Wernimont, A.K.Tempel, W.Lin, Y.H.Hutchinson, A.MacKenzie, F.Fairlamb, A.Cossar, D.Zhao, Y.Schapira, M.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Weigelt, J.Ferguson, M.A.J.Hui, R.Pizarro, J.C.Hills, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Heat shock protein 83-1
A
231Leishmania majorMutation(s): 0 
Gene Names: HSP83-2 (HSP83, HSP83-10, HSP83-11, HSP83-12, HSP83-13, HSP83-14, HSP83-15, HSP83-16, HSP83-17, HSP83-3, HSP83-5, HSP83-6, HSP83-7, HSP83-9)
Find proteins for Q4Q4I6 (Leishmania major)
Go to UniProtKB:  Q4Q4I6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
D1S
Query on D1S

Download SDF File 
Download CCD File 
A
(4E,6Z,8S,9S,10E,12S,13R,14S,16R)-19-{[3-(dimethylamino)propyl]amino}-13-hydroxy-8,14-dimethoxy-4,10,12,16-tetramethyl-3,20,22-trioxo-2-azabicyclo[16.3.1]docosa-1(21),4,6,10,18-pentaen-9-yl carbamate
C33 H50 N4 O8
UNPSMUMJWYZQHC-CYVBNFEDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.202 
  • Space Group: I 41
Unit Cell:
Length (Å)Angle (°)
a = 111.730α = 90.00
b = 111.730β = 90.00
c = 48.980γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
SCALEPACKdata scaling
TNTrefinement
DENZOdata reduction
BUSTERrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2011-02-23
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2012-12-05
    Type: Database references, Structure summary
  • Version 1.3: 2017-11-08
    Type: Refinement description