3Q3J

Crystal structure of plexin A2 RBD in complex with Rnd1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.971 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of plexin A2 RBD in complex with Rnd1

Wang, H.Tempel, W.Tong, Y.Guan, X.Shen, L.Buren, L.Zhang, N.Wernimont, A.K.Crombet, L.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Weigelt, J.Park, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Plexin-A2
A
112Homo sapiensMutation(s): 0 
Gene Names: PLXNA2 (KIAA0463, OCT, PLXN2)
Find proteins for O75051 (Homo sapiens)
Go to Gene View: PLXNA2
Go to UniProtKB:  O75051
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Rho-related GTP-binding protein Rho6
B
214Homo sapiensMutation(s): 0 
Gene Names: RND1 (RHO6)
Find proteins for Q92730 (Homo sapiens)
Go to Gene View: RND1
Go to UniProtKB:  Q92730
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download SDF File 
Download CCD File 
A, B
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
GNP
Query on GNP

Download SDF File 
Download CCD File 
B
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.971 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.211 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 59.022α = 90.00
b = 67.129β = 90.00
c = 145.291γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data reduction
SBC-Collectdata collection
HKL-3000data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
MOLREPphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-01-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description