3Q07

CTX-M-9 S70G in complex with piperacillin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.146 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

CTX-M-9 S70G mutant in complex with piperacillin

Leyssne, D.Delmas, J.Coignoux, A.Robin, F.Bonnet, R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A, B
263Escherichia coliMutation(s): 1 
Gene Names: blaCTX-M-9a (blaCTX-M-9, blaCTX-M-9b)
EC: 3.5.2.6
Find proteins for Q9L5C8 (Escherichia coli)
Go to UniProtKB:  Q9L5C8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
YPP
Query on YPP

Download SDF File 
Download CCD File 
A, B
Hydrolyzed piperacillin
(2R,4S)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid
C23 H29 N5 O8 S
OKSUEATVFIVTFV-WBTNSWJXSA-N
 Ligand Interaction
WPP
Query on WPP

Download SDF File 
Download CCD File 
A, B
Piperacillin
(2S,5R,6R)-6-{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid
C23 H27 N5 O7 S
IVBHGBMCVLDMKU-GXNBUGAJSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.146 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 45.128α = 90.00
b = 106.340β = 101.90
c = 47.610γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
SCALEPACKdata scaling
DNAdata collection
DENZOdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-12-21
    Type: Initial release