3PZ7

Crystal structure of Ccd1-DIX domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.441 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.233 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Molecular basis of WNT Activation via the DIX-domain protein CCD1

Liu, Y.T.Dan, Q.J.Wang, J.W.Feng, Y.G.Chen, L.Liang, J.Li, Q.X.Lin, S.C.Wang, Z.X.Wu, J.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dixin
A
91Homo sapiensMutation(s): 1 
Gene Names: DIXDC1 (CCD1, KIAA1735)
Find proteins for Q155Q3 (Homo sapiens)
Go to Gene View: DIXDC1
Go to UniProtKB:  Q155Q3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.441 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.233 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 62.576α = 90.00
b = 62.576β = 90.00
c = 77.722γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data collection
SOLVEphasing
PHENIXrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-12-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance