3PYB

Crystal structure of ent-copalyl diphosphate synthase from Arabidopsis thaliana in complex with 13-aza-13,14-dihydrocopalyl diphosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.759 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.177 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of ent-Copalyl Diphosphate Synthase from Arabidopsis thaliana, a Protonation-Dependent Diterpene Cyclase

Koksal, M.Hu, H.Coates, R.M.Peters, R.J.Christianson, D.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ent-copalyl diphosphate synthase, chloroplastic
A, B, C
727Arabidopsis thalianaMutation(s): 0 
Gene Names: GA1 (ABC33, CPS, CPS1, TPSGA1)
EC: 5.5.1.13
Find proteins for Q38802 (Arabidopsis thaliana)
Go to UniProtKB:  Q38802
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
A3C
Query on A3C

Download SDF File 
Download CCD File 
A
2-(methyl{2-[(1S,4aS,8aS)-5,5,8a-trimethyl-2-methylidenedecahydronaphthalen-1-yl]ethyl}amino)ethyl trihydrogen diphosphate
13-aza-13,14-dihydrocopalyl diphosphate
C19 H37 N O7 P2
ZYKKZQANNLZNRN-JENIJYKNSA-N
 Ligand Interaction
1PE
Query on 1PE

Download SDF File 
Download CCD File 
A, B, C
PENTAETHYLENE GLYCOL
PEG400
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.759 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.177 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 63.738α = 90.00
b = 188.554β = 90.00
c = 229.071γ = 90.00
Software Package:
Software NamePurpose
APSdata collection
PHENIXmodel building
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-05-25
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance