3PQE | pdb_00003pqe

Crystal structure of L-lactate dehydrogenase from Bacillus subtilis with H171C mutation

PDB DOI: https://doi.org/10.2210/pdb3PQE/pdb

Classification: OXIDOREDUCTASE
Organism(s): Bacillus subtilis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2010-11-26 Released: 2011-12-14
Deposition Author(s): Zhang, Y., Garavito, R.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.235 (Depositor), 0.228 (DCC)
R-Value Work:
0.201 (Depositor), 0.197 (DCC)
R-Value Observed:
0.202 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3PQE

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of L-lactate dehydrogenase from Bacillus subtilis with H171C mutation

zhang, Y., Garavito, R.M.

To be published.

Macromolecule Content

Total Structure Weight: 142.54 kDa
Atom Count: 9,845
Modeled Residue Count: 1,239
Deposited Residue Count: 1,304
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-lactate dehydrogenase	A, B, C, D	326	Bacillus subtilis	Mutation(s): 1 Gene Names: ldh, lctE, BSU03050 EC: 1.1.1.27
UniProt
Find proteins for P13714 (Bacillus subtilis (strain 168)) Explore P13714 Go to UniProtKB: P13714
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P13714
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.235 (Depositor), 0.228 (DCC)
R-Value Work: 0.201 (Depositor), 0.197 (DCC)
R-Value Observed: 0.202 (Depositor)

Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 133.407	α = 90
b = 133.407	β = 90
c = 99.335	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
AMoRE	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-12-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-12-14
Type: Initial release
Version 1.1: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.