3PQD

Crystal structure of L-lactate dehydrogenase from Bacillus subtilis complexed with FBP and NAD+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.376 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.214 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of L-lactate dehydrogenase from Bacillus subtilis complexed with FBP and NAD+

zhang, Y.Garavito, R.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
L-lactate dehydrogenase
A, B, C, D, E, F, G, H
326Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: ldh (lctE)
EC: 1.1.1.27
Find proteins for P13714 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P13714
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAD
Query on NAD

Download SDF File 
Download CCD File 
D
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
FBP
Query on FBP

Download SDF File 
Download CCD File 
C, D, F, G
BETA-FRUCTOSE-1,6-DIPHOSPHATE
FRUCTOSE-1,6-BISPHOSPHATE
C6 H14 O12 P2
RNBGYGVWRKECFJ-ARQDHWQXSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.376 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.214 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 171.041α = 90.00
b = 171.041β = 90.00
c = 96.272γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data collection
PHENIXrefinement
AMoREphasing
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-01-18
    Type: Initial release