3PNX | pdb_00003pnx

Crystal structure of a putative sulfurtransferase dsrE (Swol_2425) from Syntrophomonas wolfei str. Goettingen at 1.92 A resolution

PDB DOI: https://doi.org/10.2210/pdb3PNX/pdb

Classification: TRANSFERASE
Organism(s): Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-11-19 Released: 2010-12-15
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.92 Å
R-Value Free:
0.215 (Depositor), 0.220 (DCC)
R-Value Work:
0.190 (Depositor), 0.190 (DCC)
R-Value Observed:
0.191 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of a putative sulfurtransferase dsrE (Swol_2425) from Syntrophomonas wolfei str. Goettingen at 1.92 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecule Content

Total Structure Weight: 112.87 kDa
Atom Count: 7,805
Modeled Residue Count: 948
Deposited Residue Count: 960
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative sulfurtransferase dsrE	A, B, C, D, E A, B, C, D, E, F	160	Syntrophomonas wolfei subsp. wolfei str. Goettingen G311	Mutation(s): 0 Gene Names: Swol_2425
UniProt
Find proteins for Q0AU90 (Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen)) Explore Q0AU90 Go to UniProtKB: Q0AU90
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q0AU90
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain T [auth D] SDF format, chain S [auth D] SDF format, chain M [auth B] SDF format, chain K [auth A] MOL2 format, chain T [auth D] MOL2 format, chain S [auth D] MOL2 format, chain M [auth B] MOL2 format, chain K [auth A] mmCIF format, chain T [auth D] mmCIF format, chain S [auth D] mmCIF format, chain M [auth B] mmCIF format, chain K [auth A]	K [auth A], M [auth B], S [auth D], T [auth D]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain K [auth A] Focus chain M [auth B] Focus chain S [auth D] Focus chain T [auth D] Interactions & Density Focus chain K [auth A] Focus chain M [auth B] Focus chain S [auth D] Focus chain T [auth D]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain O [auth D] SDF format, chain G [auth A] MOL2 format, chain O [auth D] MOL2 format, chain G [auth A] mmCIF format, chain O [auth D] mmCIF format, chain G [auth A]	G [auth A], O [auth D]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain G [auth A] Focus chain O [auth D] Interactions & Density Focus chain G [auth A] Focus chain O [auth D]
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain L [auth B] SDF format, chain P [auth D] SDF format, chain Q [auth D] SDF format, chain U [auth E] SDF format, chain V [auth F] SDF format, chain R [auth D] SDF format, chain N [auth C] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain L [auth B] MOL2 format, chain P [auth D] MOL2 format, chain Q [auth D] MOL2 format, chain U [auth E] MOL2 format, chain V [auth F] MOL2 format, chain R [auth D] MOL2 format, chain N [auth C] mmCIF format, chain H [auth A] mmCIF format, chain I [auth A] mmCIF format, chain J [auth A] mmCIF format, chain L [auth B] mmCIF format, chain P [auth D] mmCIF format, chain Q [auth D] mmCIF format, chain U [auth E] mmCIF format, chain V [auth F] mmCIF format, chain R [auth D] mmCIF format, chain N [auth C]	H [auth A] I [auth A] J [auth A] L [auth B] N [auth C] H [auth A], I [auth A], J [auth A], L [auth B], N [auth C], P [auth D], Q [auth D], R [auth D], U [auth E], V [auth F]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain L [auth B] Focus chain N [auth C] Focus chain P [auth D] Focus chain Q [auth D] Focus chain R [auth D] Focus chain U [auth E] Focus chain V [auth F] Interactions & Density Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain L [auth B] Focus chain N [auth C] Focus chain P [auth D] Focus chain Q [auth D] Focus chain R [auth D] Focus chain U [auth E] Focus chain V [auth F]

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET
OCS Query on OCS	A, B, C, D, E A, B, C, D, E, F	L-PEPTIDE LINKING	C₃ H₇ N O₅ S		CYS