3PJL

The crystal structure of Tp34 bound to Co (II) ion at pH 7.5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Characterization of the Tp34 lipoprotein from Treponema pallidum suggests a role in transition metal homeostasis

Brautigam, C.A.Deka, R.K.Ouyang, Z.Goldberg, M.Machius, M.Knutsen, G.Tomchick, D.R.Norgard, M.V.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
34 kDa membrane antigen
A, B
212Treponema pallidum (strain Nichols)Mutation(s): 0 
Gene Names: tpd
Find proteins for P19478 (Treponema pallidum (strain Nichols))
Go to UniProtKB:  P19478
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
CO
Query on CO

Download SDF File 
Download CCD File 
A, B
COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.171 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 34.406α = 90.00
b = 65.984β = 90.00
c = 152.374γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
HKL-2000data scaling
SBC-Collectdata collection
HKL-2000data reduction
PHENIXmodel building
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-11-02
    Type: Initial release