3PII | pdb_00003pii

Crystal structure of Mutant of ht- Alcohol Dehydrogenase with substrate analogue butyramide

PDB DOI: https://doi.org/10.2210/pdb3PII/pdb

Classification: OXIDOREDUCTASE
Organism(s): Geobacillus stearothermophilus
Expression System: Escherichia coli BL21
Mutation(s): Yes

Deposited: 2010-11-06 Released: 2011-11-09
Deposition Author(s): Dong, M., Bahnson, B.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.286 (Depositor), 0.280 (DCC)
R-Value Work:
0.206 (Depositor), 0.200 (DCC)
R-Value Observed:
0.210 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of mutant of ht- Alcohol dehydrogenase

Dong, M., Bahnson, B.J.

To be published.

Macromolecule Content

Total Structure Weight: 146.93 kDa
Atom Count: 10,211
Modeled Residue Count: 1,348
Deposited Residue Count: 1,356
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol dehydrogenase	A, B [auth C], C [auth B], D	339	Geobacillus stearothermophilus	Mutation(s): 1 Gene Names: ADH-HT EC: 1.1.1.1
UniProt
Find proteins for P42328 (Geobacillus stearothermophilus) Explore P42328 Go to UniProtKB: P42328
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P42328
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain T [auth D] SDF format, chain P [auth B] SDF format, chain L [auth C] SDF format, chain H [auth A] MOL2 format, chain T [auth D] MOL2 format, chain P [auth B] MOL2 format, chain L [auth C] MOL2 format, chain H [auth A] mmCIF format, chain T [auth D] mmCIF format, chain P [auth B] mmCIF format, chain L [auth C] mmCIF format, chain H [auth A]	H [auth A], L [auth C], P [auth B], T [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain H [auth A] Focus chain L [auth C] Focus chain P [auth B] Focus chain T [auth D] Interactions & Density Focus chain H [auth A] Focus chain L [auth C] Focus chain P [auth B] Focus chain T [auth D]
BMD Query on BMD Download Ideal Coordinates CCD File SDF format, chain S [auth D] SDF format, chain O [auth B] SDF format, chain K [auth C] SDF format, chain G [auth A] MOL2 format, chain S [auth D] MOL2 format, chain O [auth B] MOL2 format, chain K [auth C] MOL2 format, chain G [auth A] mmCIF format, chain S [auth D] mmCIF format, chain O [auth B] mmCIF format, chain K [auth C] mmCIF format, chain G [auth A]	G [auth A], K [auth C], O [auth B], S [auth D]	BUTYRAMIDE C₄ H₉ N O DNSISZSEWVHGLH-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain K [auth C] Focus chain O [auth B] Focus chain S [auth D] Interactions & Density Focus chain G [auth A] Focus chain K [auth C] Focus chain O [auth B] Focus chain S [auth D]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain R [auth D] SDF format, chain Q [auth D] SDF format, chain N [auth B] SDF format, chain M [auth B] SDF format, chain J [auth C] SDF format, chain I [auth C] SDF format, chain F [auth A] SDF format, chain E [auth A] MOL2 format, chain R [auth D] MOL2 format, chain Q [auth D] MOL2 format, chain N [auth B] MOL2 format, chain M [auth B] MOL2 format, chain J [auth C] MOL2 format, chain I [auth C] MOL2 format, chain F [auth A] MOL2 format, chain E [auth A] mmCIF format, chain R [auth D] mmCIF format, chain Q [auth D] mmCIF format, chain N [auth B] mmCIF format, chain M [auth B] mmCIF format, chain J [auth C] mmCIF format, chain I [auth C] mmCIF format, chain F [auth A] mmCIF format, chain E [auth A]	E [auth A] F [auth A] I [auth C] J [auth C] M [auth B] E [auth A], F [auth A], I [auth C], J [auth C], M [auth B], N [auth B], Q [auth D], R [auth D]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain I [auth C] Focus chain J [auth C] Focus chain M [auth B] Focus chain N [auth B] Focus chain Q [auth D] Focus chain R [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain I [auth C] Focus chain J [auth C] Focus chain M [auth B] Focus chain N [auth B] Focus chain Q [auth D] Focus chain R [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.286 (Depositor), 0.280 (DCC)
R-Value Work: 0.206 (Depositor), 0.200 (DCC)
R-Value Observed: 0.210 (Depositor)

Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 145.65	α = 90
b = 145.65	β = 90
c = 135.518	γ = 120

Software Package:

Software Name	Purpose
StructureStudio	data collection
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-11-09

Deposition Author(s):

Dong, M.

Bahnson, B.J.

Revision History (Full details and data files)

Version 1.0: 2011-11-09
Type: Initial release
Version 1.1: 2017-11-08
Changes: Refinement description
Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations