3P9O | pdb_00003p9o

Aerobic ternary complex of urate oxidase with azide and chloride

• PDB DOI: https://doi.org/10.2210/pdb3P9O/pdb

• Classification: OXYGEN BINDING
• Organism(s): Aspergillus flavus
• Expression System: Saccharomyces cerevisiae
• Mutation(s): Yes 


• Deposited: 2010-10-18 Released: 2011-08-31 
• Deposition Author(s): Gabison, L., Colloc'H, N., El Hajji, M., Castro, B., Chiadmi, M., Prange, T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 
  0.255 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.201 (Depositor), 0.231 (DCC) 

Starting Model: experimental

Literature

Azide and Cyanide Show Different Inhibition Modes to Urate Oxidase

Gabison, L., Colloc'h, N., El Hajji, M., Castro, B., Chiadmi, M., Prange, T.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 34.41 kDa 
• Atom Count: 2,826 
• Modeled Residue Count: 296 
• Deposited Residue Count: 302 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uricase	A	302	Aspergillus flavus	Mutation(s): 1  Gene Names: uaZ, uox EC: 1.7.3.3
UniProt
Find proteins for Q00511 (Aspergillus flavus) Explore Q00511  Go to UniProtKB:  Q00511

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
AZI	B [auth A], C [auth A], D [auth A], E [auth A]	AZIDE ION N3 IVRMZWNICZWHMI-UHFFFAOYSA-N
CL	F [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA	G [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free:  0.255 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.201 (Depositor), 0.231 (DCC) 

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.493	α = 90
b = 94.993	β = 90
c = 104.219	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SHELX	model building
SHELXL-97	refinement
MOSFLM	data reduction
SCALA	data scaling
TRUNCATE	data scaling
SHELX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-08-31 
Deposition Author(s): Gabison, L., Colloc'H, N., El Hajji, M., Castro, B., Chiadmi, M., Prange, T.

Revision History  

• Version 1.0: 2011-08-31
  Type: Initial release
  
• Version 1.1: 2018-02-28
  Changes: Database references
• Version 1.2: 2023-09-06
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.3: 2024-11-20
  Changes: Structure summary