3P8C

Structure and Control of the Actin Regulatory WAVE Complex

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.191 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history. 


Literature

Structure and control of the actin regulatory WAVE complex.

Chen, Z., Borek, D., Padrick, S.B., Gomez, T.S., Metlagel, Z., Ismail, A.M., Umetani, J., Billadeau, D.D., Otwinowski, Z., Rosen, M.K.

(2010) Nature 468: 533-538

  • DOI: 10.1038/nature09623
  • Primary Citation of Related Structures:  
    3P8C

  • PubMed Abstract: 

    • Members of the Wiskott-Aldrich syndrome protein (WASP) family control cytoskeletal dynamics by promoting actin filament nucleation with the Arp2/3 complex. The WASP relative WAVE regulates lamellipodia formation within a 400-kilodalton, hetero-pentameric WAVE regulatory complex (WRC) ...

    Members of the Wiskott-Aldrich syndrome protein (WASP) family control cytoskeletal dynamics by promoting actin filament nucleation with the Arp2/3 complex. The WASP relative WAVE regulates lamellipodia formation within a 400-kilodalton, hetero-pentameric WAVE regulatory complex (WRC). The WRC is inactive towards the Arp2/3 complex, but can be stimulated by the Rac GTPase, kinases and phosphatidylinositols. Here we report the 2.3-ångstrom crystal structure of the WRC and complementary mechanistic analyses. The structure shows that the activity-bearing VCA motif of WAVE is sequestered by a combination of intramolecular and intermolecular contacts within the WRC. Rac and kinases appear to destabilize a WRC element that is necessary for VCA sequestration, suggesting the way in which these signals stimulate WRC activity towards the Arp2/3 complex. The spatial proximity of the Rac binding site and the large basic surface of the WRC suggests how the GTPase and phospholipids could cooperatively recruit the complex to membranes.

    Organizational Affiliation: 

    Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, 5323 Harry Hines Boulevard, Dallas, Texas 75390, USA.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cytoplasmic FMR1-interacting protein 1A1253Homo sapiensMutation(s): 0 
Gene Names: CYFIP1, KIAA0068
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Find proteins for Q7L576 (Homo sapiens)
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PHAROS:  Q7L576
GTEx:  ENSG00000273749 
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UniProt GroupQ7L576
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Nck-associated protein 1B1128Homo sapiensMutation(s): 0 
Gene Names: NCKAP1, HEM2, KIAA0587, NAP1
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Find proteins for Q9Y2A7 (Homo sapiens)
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GTEx:  ENSG00000061676 
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UniProt GroupQ9Y2A7
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Wiskott-Aldrich syndrome protein family member 1C [auth D]279Homo sapiensMutation(s): 0 
Gene Names: WASF1, KIAA0269, SCAR1, WAVE1
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Find proteins for Q92558 (Homo sapiens)
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GTEx:  ENSG00000112290 
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UniProt GroupQ92558
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Probable protein BRICK1D [auth E]75Homo sapiensMutation(s): 0 
Gene Names: C3orf10, HSPC300, MDS027, BRK1
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Find proteins for Q8WUW1 (Homo sapiens)
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PHAROS:  Q8WUW1
GTEx:  ENSG00000254999 
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UniProt GroupQ8WUW1
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Abl interactor 2E [auth F]159Homo sapiensMutation(s): 0 
Gene Names: ABI2, ARGBPIA
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GTEx:  ENSG00000138443 
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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.191 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.013α = 90
b = 113.982β = 90
c = 327.193γ = 90
Software Package:
Software NamePurpose
ADSCdata collection
MLPHAREphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

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View more in-depth experimental data

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-12-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2011-09-21
    Changes: Database references
  • Version 1.3: 2017-08-02
    Changes: Refinement description, Source and taxonomy