3P8A | pdb_00003p8a

Crystal Structure of a hypothetical protein from Staphylococcus aureus

PDB DOI: https://doi.org/10.2210/pdb3P8A/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-10-13 Released: 2011-10-19
Deposition Author(s): Lam, R., Qiu, W., Battaile, K., Lam, K., Romanov, V., Chan, T., Pai, E., Chirgadze, N.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.270 (Depositor)
R-Value Work:
0.238 (Depositor)
R-Value Observed:
0.240 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of a hypothetical protein from Staphylococcus aureus

Qiu, W., Lam, R., Battaile, K., Lam, K., Romanov, V., Chan, T., Pai, E., Chirgadze, N.Y.

To be published.

Macromolecule Content

Total Structure Weight: 66.42 kDa
Atom Count: 4,605
Modeled Residue Count: 503
Deposited Residue Count: 548
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized protein	A, B	274	Staphylococcus aureus	Mutation(s): 0 Gene Names: SA2664
UniProt
Find proteins for Q8KYA6 (Staphylococcus aureus) Explore Q8KYA6 Go to UniProtKB: Q8KYA6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8KYA6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
BTB Query on BTB Download:Ideal Coordinates CCD File SDF format, chain H [auth B] SDF format, chain D [auth A] MOL2 format, chain H [auth B] MOL2 format, chain D [auth A] mmCIF format, chain H [auth B] mmCIF format, chain D [auth A]	D [auth A], H [auth B]	2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₈ H₁₉ N O₅ OWMVSZAMULFTJU-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain H [auth B] Interactions & Density Focus chain D [auth A] Focus chain H [auth B]
PG4 Query on PG4 Download:Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A] mmCIF format, chain E [auth A]	E [auth A]	TETRAETHYLENE GLYCOL C₈ H₁₈ O₅ UWHCKJMYHZGTIT-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain N [auth B] SDF format, chain M [auth B] SDF format, chain K [auth B] SDF format, chain I [auth B] SDF format, chain G [auth A] SDF format, chain C [auth A] MOL2 format, chain N [auth B] MOL2 format, chain M [auth B] MOL2 format, chain K [auth B] MOL2 format, chain I [auth B] MOL2 format, chain G [auth A] MOL2 format, chain C [auth A] mmCIF format, chain N [auth B] mmCIF format, chain M [auth B] mmCIF format, chain K [auth B] mmCIF format, chain I [auth B] mmCIF format, chain G [auth A] mmCIF format, chain C [auth A]	C [auth A] G [auth A] I [auth B] K [auth B] M [auth B] C [auth A], G [auth A], I [auth B], K [auth B], M [auth B], N [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain G [auth A] Focus chain I [auth B] Focus chain K [auth B] Focus chain M [auth B] Focus chain N [auth B] Interactions & Density Focus chain C [auth A] Focus chain G [auth A] Focus chain I [auth B] Focus chain K [auth B] Focus chain M [auth B] Focus chain N [auth B]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain L [auth B] SDF format, chain J [auth B] SDF format, chain F [auth A] MOL2 format, chain L [auth B] MOL2 format, chain J [auth B] MOL2 format, chain F [auth A] mmCIF format, chain L [auth B] mmCIF format, chain J [auth B] mmCIF format, chain F [auth A]	F [auth A], J [auth B], L [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain F [auth A] Focus chain J [auth B] Focus chain L [auth B] Interactions & Density Focus chain F [auth A] Focus chain J [auth B] Focus chain L [auth B]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.270 (Depositor)
R-Value Work: 0.238 (Depositor)
R-Value Observed: 0.240 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 148.18	α = 90
b = 49.73	β = 90
c = 67.85	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SHARP	phasing
BUSTER	refinement
XDS	data reduction
XDS	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-10-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-10-19
Type: Initial release
Version 1.1: 2024-11-27
Changes: Data collection, Database references, Derived calculations, Structure summary