Macromolecule Content

Total Structure Weight: 76.08 kDa
Atom Count: 5757
Modelled Residue Count: 655
Deposited Residue Count: 664
Unique protein chains: 1

3P7X

Crystal structure of an atypical two-cysteine peroxiredoxin (SAOUHSC_01822) from Staphylococcus aureus NCTC8325

DOI: 10.2210/pdb3P7X/pdb

Classification: OXIDOREDUCTASE
Organism(s): Staphylococcus aureus subsp. aureus NCTC 8325
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-10-13 Released: 2011-10-19
Deposition Author(s): Bhattacharyya, S., Dutta, D., Ghosh, A.K., Das, A.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.96 Å
R-Value Free: 0.206
R-Value Work: 0.168
R-Value Observed: 0.170

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of an atypical two-cysteine peroxiredoxin (SAOUHSC_01822) from Staphylococcus aureus NCTC8325

Bhattacharyya, S., Dutta, D., Ghosh, A.K., Das, A.K.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable thiol peroxidase	A, B, C, D	166	Staphylococcus aureus subsp. aureus NCTC 8325	Mutation(s): 0 Gene Names: SAOUHSC_01822, tpx EC: 1.11.1 (PDB Primary Data), 1.11.1.24 (UniProt)
Find proteins for Q2FXL3 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FXL3 Go to UniProtKB: Q2FXL3
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PG4 Query on PG4 Download Ideal Coordinates CCD File SDF format, chain F [A] SDF format, chain G [A] SDF format, chain H [A] SDF format, chain I [A] SDF format, chain K [B] SDF format, chain L [B] SDF format, chain M [B] SDF format, chain O [C] SDF format, chain P [C] SDF format, chain Q [C] SDF format, chain R [C] SDF format, chain S [C] SDF format, chain T [C] SDF format, chain U [C] SDF format, chain V [D] MOL2 format, chain F [A] MOL2 format, chain G [A] MOL2 format, chain H [A] MOL2 format, chain I [A] MOL2 format, chain K [B] MOL2 format, chain L [B] MOL2 format, chain M [B] MOL2 format, chain O [C] MOL2 format, chain P [C] MOL2 format, chain Q [C] MOL2 format, chain R [C] MOL2 format, chain S [C] MOL2 format, chain T [C] MOL2 format, chain U [C] MOL2 format, chain V [D]	A, B, C, D	TETRAETHYLENE GLYCOL C₈ H₁₈ O₅ UWHCKJMYHZGTIT-UHFFFAOYSA-N		Ligand Interaction
DTV Query on DTV Download Ideal Coordinates CCD File SDF format, chain J [A] MOL2 format, chain J [A]	A	(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL C₄ H₁₀ O₂ S₂ VHJLVAABSRFDPM-QWWZWVQMSA-N		Ligand Interaction
DTU Query on DTU Download Ideal Coordinates CCD File SDF format, chain W [D] MOL2 format, chain W [D]	D	(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL C₄ H₁₀ O₂ S₂ VHJLVAABSRFDPM-ZXZARUISSA-N		Ligand Interaction
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain E [A] SDF format, chain N [C] MOL2 format, chain E [A] MOL2 format, chain N [C]	A, C	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.96 Å
R-Value Free: 0.206
R-Value Work: 0.168
R-Value Observed: 0.170
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.5	α = 90
b = 149.356	β = 104.43
c = 73.736	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
StructureStudio	data collection
XDS	data reduction
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2010-10-13
Released Date: 2011-10-19

Deposition Author(s):

Bhattacharyya, S.

Revision History (Full details and data files)

Version 1.0: 2011-10-19
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.