3P7N | pdb_00003p7n

Crystal structure of light activated transcription factor El222 from Erythrobacter litoralis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 
    0.329 (Depositor), 0.320 (DCC) 
  • R-Value Work: 
    0.263 (Depositor), 0.260 (DCC) 
  • R-Value Observed: 
    0.266 (Depositor) 

Starting Models: experimental
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Ligand Structure Quality Assessment 

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This is version 1.2 of the entry. See complete history


Literature

Structural basis of photosensitivity in a bacterial light-oxygen-voltage/helix-turn-helix (LOV-HTH) DNA-binding protein.

Nash, A.I.McNulty, R.Shillito, M.E.Swartz, T.E.Bogomolni, R.A.Luecke, H.Gardner, K.H.

(2011) Proc Natl Acad Sci U S A 108: 9449-9454

  • DOI: https://doi.org/10.1073/pnas.1100262108
  • Primary Citation of Related Structures:  
    3P7N

  • PubMed Abstract: 

    Light-oxygen-voltage (LOV) domains are blue light-activated signaling modules integral to a wide range of photosensory proteins. Upon illumination, LOV domains form internal protein-flavin adducts that generate conformational changes which control effector function. Here we advance our understanding of LOV regulation with structural, biophysical, and biochemical studies of EL222, a light-regulated DNA-binding protein. The dark-state crystal structure reveals interactions between the EL222 LOV and helix-turn-helix domains that we show inhibit DNA binding. Solution biophysical data indicate that illumination breaks these interactions, freeing the LOV and helix-turn-helix domains of each other. This conformational change has a key functional effect, allowing EL222 to bind DNA in a light-dependent manner. Our data reveal a conserved signaling mechanism among diverse LOV-containing proteins, where light-induced conformational changes trigger activation via a conserved interaction surface.


  • Organizational Affiliation

    Department of Biochemistry, University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-8816, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sensor histidine kinase
A, B
258Erythrobacter litoralis HTCC2594Mutation(s): 0 
Gene Names: ELI_04755
UniProt
Find proteins for Q2NB98 (Erythrobacter litoralis (strain HTCC2594))
Explore Q2NB98 
Go to UniProtKB:  Q2NB98
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2NB98
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free:  0.329 (Depositor), 0.320 (DCC) 
  • R-Value Work:  0.263 (Depositor), 0.260 (DCC) 
  • R-Value Observed: 0.266 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 37.044α = 90
b = 81.595β = 94.57
c = 65.478γ = 90
Software Package:
Software NamePurpose
ADSCdata collection
PHASERphasing
PHENIXrefinement
d*TREKdata reduction
d*TREKdata scaling

Structure Validation

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Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted FMNClick on this verticalbar to view details

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-05-25
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-09-06
    Changes: Data collection, Database references, Derived calculations, Refinement description