3P1W | pdb_00003p1w

Crystal Structure of RAB GDI from Plasmodium Falciparum, PFL2060c

PDB DOI: https://doi.org/10.2210/pdb3P1W/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Plasmodium falciparum 3D7
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-09-30 Released: 2010-12-15
Deposition Author(s): Wernimont, A.K., Neculai, A.M., Weadge, J., MacKenzie, F., Cossar, D., Tempel, W., Bochkarev, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Langsley, G., Bosch, J., Hui, R., Pizzaro, J.C., Hutchinson, A., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free:
0.201 (Depositor), 0.205 (DCC)
R-Value Work:
0.180 (Depositor), 0.185 (DCC)
R-Value Observed:
0.181 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal Structure of RAB GDI from Plasmodium Falciparum, PFL2060c

Wernimont, A.K., Neculai, A.M., Weadge, J., MacKenzie, F., Cossar, D., Tempel, W., Bochkarev, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Langsley, G., Bosch, J., Hui, R., Pizzaro, J.C., Hutchinson, A.

To be published.

Macromolecule Content

Total Structure Weight: 54.35 kDa
Atom Count: 3,820
Modeled Residue Count: 442
Deposited Residue Count: 475
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RabGDI protein	A	475	Plasmodium falciparum 3D7	Mutation(s): 0 Gene Names: PFL2060c
UniProt
Find proteins for Q8I501 (Plasmodium falciparum (isolate 3D7)) Explore Q8I501 Go to UniProtKB: Q8I501
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8I501
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free: 0.201 (Depositor), 0.205 (DCC)
R-Value Work: 0.180 (Depositor), 0.185 (DCC)
R-Value Observed: 0.181 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.885	α = 90
b = 116.565	β = 90
c = 125.916	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection
DENZO	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-12-15

Deposition Author(s):

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2010-12-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2014-10-29
Changes: Database references, Structure summary
Version 1.3: 2017-11-08
Changes: Advisory, Refinement description
Version 1.4: 2023-09-06
Changes: Advisory, Data collection, Database references, Refinement description