3OZ0

PPAR Delta in complex with azppard02


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Discovery of isoindoline and tetrahydroisoquinoline derivatives as potent, selective PPARδ agonists

Luckhurst, C.A.Stein, L.A.Furber, M.Webb, N.Ratcliffe, M.J.Allenby, G.Botterell, S.Tomlinson, W.Martin, B.Walding, A.

(2011) Bioorg.Med.Chem.Lett. 21: 492-496

  • DOI: 10.1016/j.bmcl.2010.10.117

  • PubMed Abstract: 
  • Small molecule isoindoline and tetrahydroisoquinoline derivatives have been identified as selective agonists of human peroxisome proliferator-activated receptor δ (PPARδ. Compound 18 demonstrated efficacy in a biomarker for increased fatty acid oxida ...

    Small molecule isoindoline and tetrahydroisoquinoline derivatives have been identified as selective agonists of human peroxisome proliferator-activated receptor δ (PPARδ. Compound 18 demonstrated efficacy in a biomarker for increased fatty acid oxidation, with upregulation of pyruvate dehydrogenase kinase, isozyme 4 (PDK4) in human primary myotubes.


    Organizational Affiliation

    Medicinal Chemistry, AstraZeneca R&D Charnwood, Loughborough, Leicestershire LE11 5RH, UK. chris.luckhurst@astrazeneca.com




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peroxisome proliferator-activated receptor delta
A
285Homo sapiensMutation(s): 0 
Gene Names: PPARD (NR1C2, PPARB)
Find proteins for Q03181 (Homo sapiens)
Go to Gene View: PPARD
Go to UniProtKB:  Q03181
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
3OZ
Query on 3OZ

Download SDF File 
Download CCD File 
A
[4-({(1S)-1-[(2,4-dichlorophenyl)carbamoyl]-1,3-dihydro-2H-isoindol-2-yl}methyl)-2-methylphenoxy]acetic acid
C25 H22 Cl2 N2 O4
MRCUMHGGUAFXSG-DEOSSOPVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.215 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 113.258α = 90.00
b = 49.134β = 105.34
c = 58.574γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
SCALAdata scaling
RemDAqdata collection
MOLREPphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2010-09-24 
  • Released Date: 2011-01-19 
  • Deposition Author(s): Ogg, D.

Revision History 

  • Version 1.0: 2011-01-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2012-02-29
    Type: Structure summary
  • Version 1.3: 2017-11-08
    Type: Advisory, Refinement description