3OUS | pdb_00003ous

MthK channel pore T59A mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 
    0.236 (Depositor), 0.218 (DCC) 
  • R-Value Work: 
    0.212 (Depositor), 0.224 (DCC) 

wwPDB Validation 3D Report Full Report

Validation slider image for 3OUS

This is version 1.3 of the entry. See complete history

Literature

Tuning the ion selectivity of tetrameric cation channels by changing the number of ion binding sites.

Derebe, M.G.Sauer, D.B.Zeng, W.Alam, A.Shi, N.Jiang, Y.

(2011) Proc Natl Acad Sci U S A 108: 598-602

  • DOI: https://doi.org/10.1073/pnas.1013636108
  • Primary Citation Related Structures: 
    3K03, 3OUF, 3OUS

  • PubMed Abstract: 

    Selective ion conduction across ion channel pores is central to cellular physiology. To understand the underlying principles of ion selectivity in tetrameric cation channels, we engineered a set of cation channel pores based on the nonselective NaK channel and determined their structures to high resolution. These structures showcase an ensemble of selectivity filters with a various number of contiguous ion binding sites ranging from 2 to 4, with each individual site maintaining a geometry and ligand environment virtually identical to that of equivalent sites in K(+) channel selectivity filters. Combined with single channel electrophysiology, we show that only the channel with four ion binding sites is K(+) selective, whereas those with two or three are nonselective and permeate Na(+) and K(+) equally well. These observations strongly suggest that the number of contiguous ion binding sites in a single file is the key determinant of the channel's selectivity properties and the presence of four sites in K(+) channels is essential for highly selective and efficient permeation of K(+) ions.


  • Organizational Affiliation
    • Department of Physiology, University of Texas Southwestern Medical Center, Dallas, TX 75390-9040, USA.

Macromolecule Content 

  • Total Structure Weight: 9.2 kDa 
  • Atom Count: 711 
  • Modeled Residue Count: 82 
  • Deposited Residue Count: 82 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Calcium-gated potassium channel mthK82Methanothermobacter thermautotrophicus str. Delta HMutation(s): 1 
Gene Names: mthKMTH_1520
Membrane Entity: Yes 
UniProt
Find proteins for O27564 (Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H))
Explore O27564 
Go to UniProtKB:  O27564
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO27564
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free:  0.236 (Depositor), 0.218 (DCC) 
  • R-Value Work:  0.212 (Depositor), 0.224 (DCC) 
Space Group: P 4 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 63.6α = 90
b = 63.6β = 90
c = 44.047γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CNSrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-01-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-11-08
    Changes: Refinement description
  • Version 1.3: 2024-02-21
    Changes: Data collection, Database references, Derived calculations