3ORE | pdb_00003ore

Crystal structure of TTHA0988 in space group P6522


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 
    0.316 (Depositor), 0.316 (DCC) 
  • R-Value Work: 
    0.285 (Depositor), 0.288 (DCC) 
  • R-Value Observed: 
    0.286 (Depositor) 

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Literature

The structure of TTHA0988 from Thermus thermophilus, a KipI-KipA homologue incorrectly annotated as an allophanate hydrolase

Jacques, D.A.Langley, D.B.Kuramitsu, S.Yokoyama, S.Trewhella, J.Guss, J.M.

(2011) Acta Crystallogr D Biol Crystallogr 67: 105-111

  • DOI: https://doi.org/10.1107/S0907444910051127
  • Primary Citation Related Structures: 
    3OEP, 3OPF, 3ORE

  • PubMed Abstract: 

    The Thermus thermophilus protein TTHA0988 is a protein of unknown function which represents a fusion of two proteins found almost ubiquitously across the bacterial kingdom. These two proteins perform a role regulating sporulation in Bacillus subtilis, where they are known as KipI and KipA. kipI and kipA genes are usually found immediately adjacent to each other and are often fused to produce a single polypeptide, as is the case with TTHA0988. Here, three crystal forms are reported of TTHA0988, the first structure to be solved from the family of `KipI-KipA fusion' proteins. Comparison of the three forms reveals structural flexibility which can be described as a hinge motion between the `KipI' and `KipA' components. TTHA0988 is annotated in various databases as a putative allophanate hydrolase. However, no such activity could be identified and genetic analysis across species with known allophanate hydrolases indicates that a misannotation has occurred.


  • Organizational Affiliation
    • School of Molecular Bioscience, University of Sydney, Sydney, NSW 2006, Australia.

Macromolecule Content 

  • Total Structure Weight: 106.31 kDa 
  • Atom Count: 5,454 
  • Modeled Residue Count: 744 
  • Deposited Residue Count: 988 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Putative uncharacterized protein TTHA0988
A, B
494Thermus thermophilus HB8Mutation(s): 0 
Gene Names: ttha0988
UniProt
Find proteins for Q5SJM0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore Q5SJM0 
Go to UniProtKB:  Q5SJM0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5SJM0
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free:  0.316 (Depositor), 0.316 (DCC) 
  • R-Value Work:  0.285 (Depositor), 0.288 (DCC) 
  • R-Value Observed: 0.286 (Depositor) 
Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 142.071α = 90
b = 142.071β = 90
c = 259.133γ = 120
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345dtbdata collection

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2011-02-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2024-03-20
    Changes: Data collection, Database references