3OQ0

Crystal Structure of motif N of Saccharomyces cerevisiae Dbf4

PDB DOI: https://doi.org/10.2210/pdb3OQ0/pdb

Classification: CELL CYCLE
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-09-02 Released: 2011-09-07
Deposition Author(s): Matthews, L.A., Jones, D.R., Prasad, A.A., Duncker, B.P., Guarne, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.244
R-Value Work: 0.205
R-Value Observed: 0.207

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal Structure of Saccharomyces cerevisiae Dbf4-motif N

Matthews, L.A., Jones, D.R., Prasad, A.A., Duncker, B.P., Guarne, A.

To be published.

Macromolecule Content

Total Structure Weight: 177.46 kDa
Atom Count: 8,369
Modelled Residue Count: 984
Deposited Residue Count: 1,510
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DBF4	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	151	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: D4205, DBF4, DNA52, YD9609.07C, YDR052C
UniProt
Find proteins for P32325 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32325 Go to UniProtKB: P32325
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P32325
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.244
R-Value Work: 0.205
R-Value Observed: 0.207
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.221	α = 90
b = 79.358	β = 110.74
c = 127.419	γ = 90

Software Package:

Software Name	Purpose
CBASS	data collection
PHENIX	model building
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-09-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-09-07
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.