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Download EndnoteCrystal structure of a Bacterial protein of unknown function (BACOVA_03626) from Bacteroides ovatus at 1.70 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3ON6
Crystal structure of an exo-alpha-1,6-mannosidase (bacova_03626) from bacteroides ovatus at 1.70 a resolution
- DOI: 10.2210/pdb3ON6/pdb
- Classification: HYDROLASE
- Organism(s): Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153)
- Expression System: Escherichia coli
- Deposited: 2010-08-27 Released: 2010-09-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.166
- R-Value Work: 0.133
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Uncharacterized protein | A, B | 461 | Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) | Mutation(s): 0 |
Find proteins for A7M0J6 (Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153)) Go to UniProtKB: A7M0J6 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | A, B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| PEG Query on PEG | A | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.166
- R-Value Work: 0.133
- Space Group: P 1 21 1
- Diffraction Data DOI:
10.18430/M33ON6 Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 51.613 | α = 90.00 |
| b = 91.138 | β = 92.35 |
| c = 99.124 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| PDB_EXTRACT | data extraction |
| SHELXD | phasing |
| SHELX | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| autoSHARP | phasing |
| XSCALE | data scaling |
Entry History
Deposition Data
- Deposited Date: 2010-08-27
- Released Date: 2010-09-15
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2010-09-15
Type: Initial release - Version 1.1: 2011-07-13
Type: Version format compliance - Version 1.2: 2017-10-25
Type: Author supporting evidence
