3OFH | pdb_00003ofh

Structured Domain of Mus musculus Mesd

PDB DOI: https://doi.org/10.2210/pdb3OFH/pdb

Classification: CHAPERONE
Organism(s): Mus musculus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-08-14 Released: 2011-03-02
Deposition Author(s): Collins, M.N., Hendrickson, W.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å
R-Value Free:
0.174 (Depositor), 0.172 (DCC)
R-Value Work:
0.147 (Depositor), 0.149 (DCC)
R-Value Observed:
0.150 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3OFH

This is version 1.3 of the entry. See complete history.

Literature

Structural Characterization of the Boca/Mesd Maturation Factors for LDL-Receptor-Type beta-Propeller Domains

Collins, M.N., Hendrickson, W.A.

(2011) Structure

Macromolecule Content

Total Structure Weight: 20.2 kDa
Atom Count: 1,401
Modeled Residue Count: 165
Deposited Residue Count: 178
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LDLR chaperone MESD	A, B	89	Mus musculus	Mutation(s): 0 Gene Names: Mesd, Mesdc2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9ERE7 (Mus musculus) Explore Q9ERE7 Go to UniProtKB: Q9ERE7
IMPC: MGI:1891421
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9ERE7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å
R-Value Free: 0.174 (Depositor), 0.172 (DCC)
R-Value Work: 0.147 (Depositor), 0.149 (DCC)
R-Value Observed: 0.150 (Depositor)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.651	α = 90
b = 71.651	β = 90
c = 37.102	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
MAR345	data collection

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-03-02

Deposition Author(s):

Hendrickson, W.A.

Revision History (Full details and data files)

Version 1.0: 2011-03-02
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-08
Changes: Refinement description
Version 1.3: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.