3OFG

Structured Domain of Caenorhabditis elegans BMY-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.367 Å
  • R-Value Free: 0.168 
  • R-Value Work: 0.146 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural Characterization of the Boca/Mesd Maturation Factors for LDL-Receptor-Type beta-Propeller Domains

Collins, M.N.Hendrickson, W.A.

(2011) Structure --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Boca/mesd chaperone for ywtd beta-propeller-egf protein 1
A, B
95Caenorhabditis elegansMutation(s): 0 
Gene Names: bmy-1
Find proteins for Q8IG33 (Caenorhabditis elegans)
Go to UniProtKB:  Q8IG33
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.367 Å
  • R-Value Free: 0.168 
  • R-Value Work: 0.146 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 29.522α = 63.39
b = 38.148β = 85.74
c = 40.706γ = 84.69
Software Package:
Software NamePurpose
SCALEPACKdata scaling
DENZOdata reduction
MAR345data collection
PDB_EXTRACTdata extraction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-03-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description