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Download EndnoteCrystal structure of a FMN/FAD- and NAD(P)H-dependent nitroreductase (nfnB, IL2077) from Idiomarina loihiensis L2TR at 1.90 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3OF4
Crystal structure of a FMN/FAD- and NAD(P)H-dependent nitroreductase (nfnB, IL2077) from Idiomarina loihiensis L2TR at 1.90 A resolution
- DOI: 10.2210/pdb3OF4/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
- Expression System: Escherichia coli
- Deposited: 2010-08-13 Released: 2010-08-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.9 Å
- R-Value Free: 0.194
- R-Value Work: 0.157
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Nitroreductase | A, B, C | 209 | Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) | Mutation(s): 0 Gene Names: nfnB |
Find proteins for Q5R179 (Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)) Go to UniProtKB: Q5R179 | ||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A, B, C | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| FMN Query on FMN | A, B | FLAVIN MONONUCLEOTIDE RIBOFLAVIN MONOPHOSPHATE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N |  | Ligand Interaction | |
| ACT Query on ACT | B | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| FAD Query on FAD | C | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N |  | Ligand Interaction | |
| GOL Query on GOL | A, B, C | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.9 Å
- R-Value Free: 0.194
- R-Value Work: 0.157
- Space Group: C 1 2 1
- Diffraction Data DOI:
10.18430/M33OF4 Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 154.702 | α = 90.00 |
| b = 74.051 | β = 112.49 |
| c = 64.565 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| SHELXD | phasing |
| autoSHARP | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| SHELX | phasing |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Deposited Date: 2010-08-13
- Released Date: 2010-08-25
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2010-08-25
Type: Initial release - Version 1.1: 2011-07-13
Type: Version format compliance - Version 1.2: 2011-07-20
Type: Structure summary
