3ODG

crystal structure of xanthosine phosphorylase bound with xanthine from Yersinia pseudotuberculosis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.155 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

crystal structure of xanthosine phosphorylase bound with xanthine from Yersinia pseudotuberculosis

Kim, J.Ramagopal, U.A.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Xanthosine phosphorylase
A
287Yersinia pseudotuberculosis serotype I (strain IP32953)Mutation(s): 0 
Gene Names: xapA
EC: 2.4.2.1
Find proteins for Q66D48 (Yersinia pseudotuberculosis serotype I (strain IP32953))
Go to UniProtKB:  Q66D48
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
XAN
Query on XAN

Download SDF File 
Download CCD File 
A
XANTHINE
C5 H4 N4 O2
LRFVTYWOQMYALW-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.155 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 96.470α = 90.00
b = 96.470β = 90.00
c = 48.906γ = 120.00
Software Package:
Software NamePurpose
MOLREPphasing
HKL-2000data scaling
REFMACrefinement
HKL-2000data reduction
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-08-25
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance