3O47

Crystal structure of ARFGAP1-ARF1 fusion protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of ARFGAP1-ARF1 fusion protein

Wang, H.Tong, Y.Nedyalkova, L.Tempel, W.Guan, X.Crombet, L.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Weigelt, J.Bochkarev, A.Park, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ADP-ribosylation factor GTPase-activating protein 1, ADP-ribosylation factor 1
A, B
329Homo sapiensGene Names: ARF1, ARFGAP1 (ARF1GAP)
Find proteins for P84077 (Homo sapiens)
Go to Gene View: ARF1
Go to UniProtKB:  P84077
Find proteins for Q8N6T3 (Homo sapiens)
Go to Gene View: ARFGAP1
Go to UniProtKB:  Q8N6T3
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
A, B
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.206 
  • Space Group: I 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 79.298α = 90.00
b = 129.161β = 90.00
c = 157.685γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PDB_EXTRACTdata extraction
BUSTERrefinement
DENZOdata reduction
BUSTER-TNTrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-08-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-08-09
    Type: Refinement description, Source and taxonomy
  • Version 1.3: 2017-11-08
    Type: Refinement description