3O17 | pdb_00003o17

Crystal Structure of JNK1-alpha1 isoform

• PDB DOI: https://doi.org/10.2210/pdb3O17/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens, Mus musculus
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2010-07-20 Released: 2011-01-12 
• Deposition Author(s): Abad-Zapatero, C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 
  0.308 (Depositor), 0.302 (DCC) 
• R-Value Work: 
  0.263 (Depositor), 0.254 (DCC) 
• R-Value Observed: 
  0.263 (Depositor) 

Literature

Crystal Structure of JNK1-alpha1 isoform

Comess, K.M., Sun, C., Abad-Zapatero, C., Borhani, D., Goedken, E., Argiriardi, M., Groebe, D.R., Gum, R.J., Jia, Y., Clampit, J.E., Haasch, D.L., Smith, H.T., Wang, S., Song, D., Coen, M.L., Cloutier, T.E., Tang, H., Cheng, X., Quinn, C., Liu, B., Xin, Z., Liu, G., Fry, E.H., Stoll, V., Ng, T.I., Banach, D., Marcotte, D., Burns, D.J., Hajduk, P.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 4-mer - A2B1C1 

Biological assembly 3 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 88.51 kDa 
• Atom Count: 5,956 
• Modeled Residue Count: 734 
• Deposited Residue Count: 760 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitogen-activated protein kinase 8	A, C [auth B]	370	Homo sapiens	Mutation(s): 3  Gene Names: JNK1, MAPK8, PRKM8, SAPK1 EC: 2.7.11.24
UniProt & NIH Common Fund Data Resources
Find proteins for P45983 (Homo sapiens) Explore P45983  Go to UniProtKB:  P45983
PHAROS:  P45983 GTEx:  ENSG00000107643

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
C-Jun-amino-terminal kinase-interacting protein 1, JIP1, 10MER PEPTIDE	B [auth F], D [auth G]	10	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9WVI9 (Mus musculus) Explore Q9WVI9  Go to UniProtKB:  Q9WVI9
IMPC:  MGI:1309464

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	E [auth A], F [auth A], G [auth B], H [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free:  0.308 (Depositor), 0.302 (DCC) 
• R-Value Work:  0.263 (Depositor), 0.254 (DCC) 
• R-Value Observed: 0.263 (Depositor) 

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 155.85	α = 90
b = 155.85	β = 90
c = 124.492	γ = 120

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-01-12 
Deposition Author(s): Abad-Zapatero, C.

Revision History  

• Version 1.0: 2011-01-12
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-02-21
  Changes: Data collection, Database references, Derived calculations