3O15

Crystal Structure of Bacillus subtilis Thiamin Phosphate Synthase Complexed with a Carboxylated Thiazole Phosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.198 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure and Kinetic Characterization of Bacillus subtilis Thiamin Phosphate Synthase with a Carboxylated Thiazole Phosphate

McCulloch, K.M.Hanes, J.W.Abdelwahed, S.Mahanta, N.Hazra, A.Ishida, K.Begley, T.P.Ealick, S.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thiamine-phosphate pyrophosphorylase
A
235Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: thiE (thiC, ywbK)
EC: 2.5.1.3
Find proteins for P39594 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P39594
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IFP
Query on IFP

Download SDF File 
Download CCD File 
A
2-TRIFLUOROMETHYL-5-METHYLENE-5H-PYRIMIDIN-4-YLIDENEAMINE
4-IMINO-5-METHIDYL-2-TRIFLUOROMETHYLPYRIMIDINE
C6 H4 F3 N3
YKFRUALXTUDSBW-UHFFFAOYSA-N
 Ligand Interaction
POP
Query on POP

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Download CCD File 
A
PYROPHOSPHATE 2-
H2 O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-L
 Ligand Interaction
3NM
Query on 3NM

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Download CCD File 
A
4-methyl-5-[2-(phosphonooxy)ethyl]-1,3-thiazole-2-carboxylic acid
C7 H10 N O6 P S
XWECMAHAKFWYNV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.198 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 96.020α = 90.00
b = 96.020β = 90.00
c = 59.340γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
CNSphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-07-27
    Type: Initial release
  • Version 1.1: 2017-11-08
    Type: Refinement description