3O04

Crystal structure of the beta-keto-acyl carrier protein synthase II (lmo2201) from Listeria monocytogenes

• PDB DOI: https://doi.org/10.2210/pdb3O04/pdb

• Classification: TRANSFERASE
• Organism(s): Listeria monocytogenes EGD-e
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2010-07-19 Released: 2010-08-04 
• Deposition Author(s): Anderson, S.M., Wawrzak, Z., Onopriyenko, O., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.175 
• R-Value Work: 0.151 
• R-Value Observed: 0.152 

Literature

Crystal structure of the beta-keto-acyl carrier protein synthase II (lmo2201) from Listeria monocytogenes

Anderson, S.M., Wawrzak, Z., Onopriyenko, O., Anderson, W.F., Savchenko, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 44.96 kDa 
• Atom Count: 3,630 
• Modelled Residue Count: 413 
• Deposited Residue Count: 413 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
beta-keto-acyl carrier protein synthase II	A	413	Listeria monocytogenes EGD-e	Mutation(s): 1  Gene Names: lmo2201
UniProt
Find proteins for Q8Y574 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)) Explore Q8Y574  Go to UniProtKB:  Q8Y574

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.175 
• R-Value Work: 0.151 
• R-Value Observed: 0.152 
• Space Group: P 4₃ 2₁ 2
• Diffraction Data: https://doi.org/10.18430/m33o04

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.742	α = 90
b = 74.742	β = 90
c = 170.694	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
BLU-MAX	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SHELXS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-08-04 
Deposition Author(s): Anderson, S.M., Wawrzak, Z., Onopriyenko, O., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2010-08-04
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2021-10-06
  Changes: Database references, Derived calculations