3NWG

The crystal structure of a microcomparments protein from Desulfitobacterium hafniense DCB


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.223 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of a PduT homolog from a novel bacterial microcompartment

Greenleaf, W.B.Fan, Y.Axen, S.Volkart, L.Gu, M.Joachimiak, A.Kerfeld, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Microcompartments protein
A
182Desulfitobacterium hafniense (strain DCB-2 / DSM 10664)Mutation(s): 0 
Find proteins for B8G1Q4 (Desulfitobacterium hafniense (strain DCB-2 / DSM 10664))
Go to UniProtKB:  B8G1Q4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.223 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 104.862α = 90.00
b = 104.862β = 90.00
c = 81.309γ = 120.00
Software Package:
Software NamePurpose
RESOLVEmodel building
REFMACrefinement
SHELXDphasing
RESOLVEphasing
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000phasing
HKL-3000data scaling
MLPHAREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-09-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Author supporting evidence, Refinement description