3NUI | pdb_00003nui

Crystal structure of omega-transferase from Vibrio Fluvialis JS17

PDB DOI: https://doi.org/10.2210/pdb3NUI/pdb

Classification: TRANSFERASE
Organism(s): Vibrio fluvialis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-07-07 Released: 2011-06-29
Deposition Author(s): Park, H.H., Jang, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.242 (Depositor), 0.240 (DCC)
R-Value Work:
0.191 (Depositor), 0.190 (DCC)
R-Value Observed:
0.194 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the first omega-transaminase at 2.0A resolution

Park, H.H., Jang, T.

To be published.

Macromolecule Content

Total Structure Weight: 105.71 kDa
Atom Count: 7,096
Modeled Residue Count: 844
Deposited Residue Count: 956
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyruvate transaminase	A, B	478	Vibrio fluvialis	Mutation(s): 0
UniProt
Find proteins for F2XBU9 (Vibrio fluvialis) Explore F2XBU9 Go to UniProtKB: F2XBU9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	F2XBU9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.242 (Depositor), 0.240 (DCC)
R-Value Work: 0.191 (Depositor), 0.190 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.075	α = 90
b = 95.03	β = 90
c = 123.079	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-06-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-06-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2018-02-07
Changes: Experimental preparation
Version 1.3: 2024-03-20
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.