Macromolecule Content

Total Structure Weight: 80323.03
Atom Count: 5146
Residue Count: 708
Unique protein chains: 1

3NMW

Crystal structure of armadillo repeats domain of APC

DOI: 10.2210/pdb3NMW/pdb

Classification: CELL ADHESION/CELL CYCLE
Organism(s): Homo sapiens
Expression System: Escherichia coli

Deposited: 2010-06-22 Released: 2011-07-06
Deposition Author(s): Zhang, Z., Chen, L., Gao, L., Lin, K., Wu, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.6 Å
R-Value Free: 0.201
R-Value Work: 0.168

wwPDB Validation3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Structural basis for the recognition of Asef by adenomatous polyposis coli

Zhang, Z., Chen, L., Gao, L., Lin, K., Zhu, L., Lu, Y., Shi, X., Gao, Y., Zhou, J., Xu, P., Zhang, J., Wu, G.

(2012) Cell Res. 22: 372-386

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
APC variant protein	A, B	354	Homo sapiens	Mutation(s): 0 Gene Names: APC (DP2.5)
Find proteins for P25054 (Homo sapiens) Go to Gene View: APC Go to UniProtKB: P25054
Protein Feature View Full Protein Feature View for P25054

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
SO4 Query on SO4 Download SDF File Download CCD File	A, B	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.6 Å
R-Value Free: 0.201
R-Value Work: 0.168
Space Group: P 1

Unit Cell:

Length (Å)	Angle (°)
a = 51.389	α = 90.31
b = 52.682	β = 89.95
c = 63.451	γ = 95.16

Software Package:

Software Name	Purpose
SOLVE	phasing
RESOLVE	phasing
SCALEPACK	data scaling
PDB_EXTRACT	data extraction
REFMAC	refinement

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2010-06-22
Released Date: 2011-07-06
Deposition Author(s): Zhang, Z., Chen, L., Gao, L., Lin, K., Wu, G.

Revision History

Version 1.0: 2011-07-06
Type: Initial release
Version 1.1: 2011-07-13
Type: Version format compliance
Version 1.2: 2016-12-21
Type: Structure summary
Version 1.3: 2017-03-15
Type: Database references

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.