3NDZ

The structure of the catalytic and carbohydrate binding domain of endoglucanase D from Clostridium cellulovorans bound to cellotriose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.144 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The structure of the catalytic and carbohydrate binding domain of endoglucanase D bound to cellotriose

Bianchetti, C.M.Smith, R.W.Bingman, C.A.Phillips Jr., G.N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Endoglucanase D
A, B, C, D
345Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B)Mutation(s): 0 
Gene Names: engD
EC: 3.2.1.4
Find proteins for P28623 (Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B))
Go to UniProtKB:  P28623
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Endoglucanase D
E, F, G, H
107Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B)Mutation(s): 0 
Gene Names: engD
EC: 3.2.1.4
Find proteins for P28623 (Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B))
Go to UniProtKB:  P28623
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CT3
Query on CT3

Download SDF File 
Download CCD File 
A, B, C, D
beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranose
Beta-CELLOTRIOSE
C18 H32 O16
FYGDTMLNYKFZSV-CSHPIKHBSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.144 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 85.297α = 90.00
b = 119.050β = 90.00
c = 198.487γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXphasing
SCALEPACKdata scaling
DENZOdata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-06-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance