Download MendeleyCrystal structure of Precorrin-6A synthase from Rhodobacter capsulatus
Seyedarabi, A., Pickersgill, R.W.To be published.
3ND1
Crystal structure of Precorrin-6A synthase from Rhodobacter capsulatus
- PDB DOI: https://doi.org/10.2210/pdb3ND1/pdb
- Classification: TRANSFERASE
- Organism(s): Rhodobacter capsulatus SB 1003
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-06-06 Released: 2011-06-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.220
- R-Value Work: 0.194
- R-Value Observed: 0.195
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Precorrin-6A synthase/CobF protein | A, B | 275 | Rhodobacter capsulatus SB 1003 | Mutation(s): 0 Gene Names: cobF, RCAP_rcc02038 EC: 2.1.1 (PDB Primary Data), 2.1.1.152 (UniProt) |  |
UniProt | |||||
Find proteins for D5AV00 (Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)) Explore D5AV00 Go to UniProtKB: D5AV00 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D5AV00 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SAH Query on SAH | C [auth A], F [auth B] | S-ADENOSYL-L-HOMOCYSTEINE C14 H20 N6 O5 S ZJUKTBDSGOFHSH-WFMPWKQPSA-N |  | Ligand Interaction | |
| ACT Query on ACT | D [auth A], E [auth A], G [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.220
- R-Value Work: 0.194
- R-Value Observed: 0.195
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.661 | α = 90 |
| b = 89.283 | β = 90 |
| c = 107.163 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOLREP | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2011-06-08 Deposition Author(s): Seyedarabi, A., Pickersgill, R.W.
Revision History (Full details and data files)
- Version 1.0: 2011-06-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
